Title: In-silico studies of microRNAs regulation in higher eukaryotes from the perspective of
molecular evolution. Topics: Bioinformatics, Molecular Evolution, MicroRNAs, Human Diseases, Epigenetics. Supervisor: Prof. T.C. Ghosh Workplace: Bose Institute (J.C. Bose Institute), Kolkata, India University: Maulana Abul Kalam Azad University of Technology, West Bengal, India Year: 2017
2026
Longo M, Desiderio A, Masulli M, Das J, Spinelli R, Parrillo L, Rotondo M, Zatterale F, Volpe M, Riccardi G, Vaccaro O, Miele C, Napoli R, Beguinot F, Raciti GA.Blood-Based DNA Methylation Models Improve Short-term Cardiovascular Risk Stratification in Individuals With Type 2 Diabetes. Diabetes Care, 49(9):1705–1713.
Braian, C., Karlsson, L., Das, J., &
Lerm, M.Selected β-Glucans Act as Immune-Training Agents by Improving Anti-Mycobacterial
Activity in Human Macrophages: A Pilot Study. J Innate Immun 15(1):751–764.
Lundquist, H., Andersson, H., Chew, M. S., Das, J., Turkina, M. V., & Welin, A.The
Olfactomedin-4-Defined Human Neutrophil Subsets Differ in Proteomic Profile in Healthy Individuals and
Patients with Septic Shock. J Innate Immun 15(1):351–364.
Lundquist, H., Andersson, H., Chew, M. S., Das, J., Turkina, M. V., & Welin, A.miRNome and Proteome
Profiling of Human Keratinocytes and Adipose Derived Stem Cells Proposed miRNA-Mediated Regulations of
Epidermal Growth Factor and Interleukin 1-Alpha. Int. J. Mol. Sci. 24(5), 4956.
Verma, D., Kasic, N.‐K., Jeppsson, F., Eding, C. B., Lysiak, M., Fekri, S.
Z., Das, J., & Enerback, C.Differential DNA
Methylation of MicroRNA-Encoding Genes in Psoriatic Epidermis Highlights the Wnt Pathway. Journal
of Investigative Dermatology, 143(5), S140.
Verma, D., Kasic, N., et al.Altered methylation of microRNA in
the psoriatic epidermis highlights the Wnt pathway. Journal of Investigative Dermatology, 143(5),
S140, 2023.
Pehrson I, Sayyab S, Das J, Idh N, Paues J, Méndez-Aranda M, Ugarte-Gil C, Lerm M.The spectrum of tuberculosis described as differential DNA methylation patterns in alveolar macrophages and alveolar T cells. Clinical Epigenetics, 14(1):1–12.
Das J, Idh N, Sikkeland LI, Paues J,
Lerm M.DNA methylome-based validation of induced sputum as an effective protocol to study
lung immunity: construction of a classifier of pulmonary cell types. Epigenetics, 17(8):882-93.
Huoman J, Sayyab S, Apostolou E, Karlsson L, Porcile L, Rizwan M, Sharma S,
Das J, Rosén A, Lerm M.Epigenetic rewiring of
pathways related to odour perception in immune cells exposed to SARS-CoV-2 in vivo and in vitro.
Epigenetics.
Łysiak M, Das J, Malmström A,
Söderkvist P.Methylation associated with long- or short-term survival in glioblastoma
patients from the Nordic phase 3 trial. Front Genet. 13:934519.
Verma, D., Kasic, N., et al.Differential DNA Methylation of
microRNA-encoding Genes in Psoriatic Epidermis Highlights the Wnt Pathway. Journal of
Investigative Dermatology, 142(12), S229, 2022.
Karlsson L, Das J, Nilsson M, et
al.A differential DNA methylome signature of pulmonary immune cells from individuals
converting to latent tuberculosis infection. Scientific Reports, 11(1):1-3.
Zhu GH, Azharuddin M, Islam R, Rahmoune H, Deb S, Kanji U, Das J, et al.Innate Immune Invisible Ultrasmall Gold
Nanoparticles—Framework for Synthesis and Evaluation. ACS Applied Materials & Interfaces.
13(20):23410-22.
Singhania A, Dubelko P, Kuan R, Chronister WD, Muskat K, Das J, et al.CD4+ CCR6+ T cells dominate the BCG-induced
transcriptional signature. EBioMedicine. 74:103746.
Das J, Idh N, Paues J, Lerm M.A DNA methylome biosignature in alveolar macrophages from TB-exposed individuals predicts exposure to
mycobacteria. medRxiv 2021.
Pehrson I, Braian C, et al.DNA methylation profiling of immune
cells from tuberculosis-exposed individuals overlaps with BCG-induced epigenetic changes...
medRxiv 2021.
Das J, Verma D, Gustafsson M, Lerm
M.Identification of DNA methylation patterns predisposing for an efficient response to BCG
vaccination in healthy BCG-naïve subjects. Epigenetics. 14(6):589-601.
Sen K, Bhattacharyya D, Sarkar A, Das
J, et al.Exploring the major cross-talking edges of competitive endogenous RNA
networks in human Chronic and Acute Myeloid Leukemia. Biochimica et Biophysica Acta (BBA)-General
Subjects. 1862(9):1883-92.